High Performance
Computing Systems and Applications
edited
by
Andrew Pollard
Dept. of
Mechanical Engineering, Queen's University, Kingston, ON,
Canada
Douglas J.K. Mewhort
Dept. of
Psychology, Queen's University, Kingston, ON,
Canada
Donald F. Weaver
Dept. of
Chemistry, Queen's University, Kingston, ON,
Canada
Preface.
Part I: Keynote Presentations. 1. High
Performance Computing in North America; J.W.D.
Connolly. 2. Enabling Chemistry Applications with
High Performance Computing; M.S. Gordon. 3. High
Performance Programming for Computational Scientists; G.V.
Wilson. 4. Computational Cognition and the Age of
Supercomputing: Using High-Performance Computing and Usenet to
Model Memory, Meaning and the Mind; Curt Burgess.
5. Web-Centric Supercomputing; S. Khan. Part
II: Panel Discussion. 6. Sharing and
Security Policies for HPC and HPN; R.D. Kent, P.
Preney. Part III: Policy. 7. Toward a Model
of Models: Part I; P.D. Preney, et al. 8. Toward
a Model of Models: Part II; M. Schlesinger, R.D.
Kent. 9. Prospects for a Distributed Research
Network: Case Studies of Means, Mechanism and Issues; P.
Wolstenholme, L. Jorgenson. Part IV: Distributed
Memory Performance. 10. A Testing Strategy for
Nondeterministic Message Passing Programs; D.
Kranzlmüller, et al. 11. Roots: An
Object-Oriented Active Message Library; R. van der
Goot. 12. Hardware Performance and Communication
Models of a Distributed Memory Parallel Computer System: A
Case Study; T.T. Le, et al. Part V: Computational
Chemistry. 13. Applications of High Performance
Computing in Vaccine Design; A. Bérces, et al.
14. Modelling Molecules in Intense Laser Fields -
Numerical Methods for an IBM-SP2 Parallel Computer
Environment; A.D. Bandrauk, H.-Z. Lu. 15.
Molecular Modeling of the Interaction of Neurotrophins with
the p75NTR Common Neurotrophin Receptor; I.L.
Shamovsky, et al. 16. Large Scale Molecular
Dynamics Simulation using MD-Engine; K. Uehara, et al.
17. Parallel Computational Strategies for Viscous
Hydrodynamics with Applications to Microfluidics; S.
Kim. Part VI: Unusual Architectures.
18. Graph Algorithms on the Linear Array with a
Reconfigurable Optical Bus; Y. Pan, Y. Li. 19.
Communication Latency Hiding in Reconfigurable Message-Passing
Environments: Quantitative Studies; A. Afsahi, N.J.
Dimopoulos. 20. Parallel Processing of the Evolving
Tree Transformation System; G.G. Meldrum, V.C. Bhavsar.
Part VII: Computational Biology. 21.
Computer-Based Analysis of Completely Sequenced Bacterial
Genomes Reveals a Link Between Nucleotide Bias and Amino Acid
Composition; G.A.C. Singer, D.A. Hickey. 22.
Virtual Enhancement of Combinatorial Libraries; J.A.
Bikker. 23. Bluejay: A Browser for Linear Units in
Java; P. Gordon, C.W. Sensen. Part VIII: High
Level Applications. 24. The `Structured-Universe
Approach' for Irregular and Dynamic Spatial Structures; A.
Schramm. 25. World Distribution Protocol for
Support of Scalable General Purpose Distributed Virtual
Environments; R. Fortier, et al. 26. A
Programming System for Parallel Execution of Fortran
Subprograms in Distributed Environment; K.M. Ben Hamed, W.
Du. 27. Condensed Graphs: A Multi-Level, Parallel,
Abstract Machine; J.P. Morrison, N.J. Dalton.
28. Object-Oriented Distributed and Parallel I/O
Streams; A. Dick, et al. 29.
Parallelization of an Airline Flight-Scheduling Module on a
SCI-Coupled NUMA Shared Memory Cluster; M. Dormanns, et
al. Part IX: Atmospheric Sciences.
30. Darwinian Evolution at RPN; M. Valin.
31. High-Resolution Weather Forecasting: A Teraflop
Sustained on RISC/cache or Vector Processors; S.J. Thomas,
et al. 32. High-Performance Modelling for the
Mesoscale Alpine Programme (MAP) Field Experiment; R.
Benoit, et al. 33. Climate Modelling at the
University of Victoria; E.C. Wiebe, et al. 34.
Air Quality Prediction System; J. Pudykiewicz.
35. On the Use of Coupled Atmospheric and Hydrologic
Models at Regional Scale; P. Pellerin, et al. Part
X: Algorithms. 36. A Note on Coarse Grained
Parallel Integer Sorting; A. Chan, F. Dehne.
37. Fast and Scalable Parallel Algorithm for Matrix
Chain Product and Matrix Powers on Optical Buses; K.
Li. 38. An Efficient Transposition Algorithm for
Distributed Memory Computers; C. Christara, et
al. Part XI: Tools. 39. Large Imagery Data
Structuring Using Hierarchical Data Format for Parallel
Computing and Visualization; C.J. Tan, et al. Part
XII: Shared Memory. 40. Cache Performance on
Parallel Hash Join Algorithms; E.D. Moreno, et al.
41. Easy-Par: A Hybrid Environment Based on
Message-Passing and Distributed Shared Memory; M.A.R.
Dantas, A.C.M.A. Melo. 42. A Preliminary DSM
Speedup Comparison: JIAJIA x Nautilus; M.D. Marino,
G.L. de Campos. Part XIII: Solvers. 43. A
Parallel Direct 3D Elliptic Solver; A. Qaddouri, et al.
44. Reading Words Aloud: An Example of Retrieval from
Semantic Memory; D.J.K. Mewhort, P.J. Kwantes.
45. Computing Numerical Distribution Functions in
Econometrics; J.G. MacKinnon. Part XIV:
Health. 46. High-Performance Computing for
Computer-Aided Diagnosis of Breast Cancer; R.M.
Rangayyan. 47. Bioinformatics Challenges Facing
Medical Research Professionals and the Tools to Face Them;
J. Cuticchia. Part XV: Computational Physics.
48. Monte Carlo Simulations of Polymers in Solution;
M.P. Pépin, et al. 49. Monte Carlo
Studies of the Self-Assembly of Amphiphilic Molecules; M.
Kenward, M.D. Whitmore. 50. Modeling Geometrical
Heterogeneity in Biofilms; H. Eberl, et al. Part
XVI: General. 51. Experiences Using
High-Level Programming for Parallel Cellular Computation;
G. Spezzano, D. Talia. 52. A Parallel Analytical
Solution of a Stochastic Combat Model; J. Fugère, Y.
Liang. 53. Parallel Finite Element Simulation of 3D
Mold-Filling Problems; M. Audet, et al. Part
XVII: Poster Session. 54. Performance Analysis of
Tape Libraries for Supercomputing Environments; I.
Hamzaoglu, H. Simitci. 55. Network Parallel
Computing for SOM Neural Networks; G. Labonté, M.
Quintin. 56. Relaxation Phenomena of Ultra-Thin
Magnetic Films; S.P. Bromley, J.P. Whitehead.
Index. |
